Docker

Run SAIGE-QTL using a docker image

Thanks to Juha Karjalainen for sharing the Dockerfile.

Dockerfile can be found in the SAIGE-QTL folder: ./docker/Dockerfile
The docker image can be pulled
```
  docker pull wzhou88/saigeqtl:0.1.0
```

Functions can be called

step1_fitNULLGLMM_qtl.R --help
step2_tests_qtl.R --help
step3_gene_pvalue_qtl.R --help
makeGroupFile.R  --help

If docker version of SAIGE-QTL is run on a local system

docker run wzhou88/saigeqtl:0.1.0 step1_fitNULLGLMM_qtl.R --help
docker run wzhou88/saigeqtl:0.1.0 step2_tests_qtl.R --help
docker run wzhou88/saigeqtl:0.1.0 step3_gene_pvalue_qtl.R --help
docker run wzhou88/saigeqtl:0.1.0 makeGroupFile.R  --help

NOTE: -v option is also important for docker run to Bind mount a volume. Check link for more details.